Package: heatmaply 1.5.0
heatmaply: Interactive Cluster Heat Maps Using 'plotly' and 'ggplot2'
Create interactive cluster 'heatmaps' that can be saved as a stand- alone HTML file, embedded in 'R Markdown' documents or in a 'Shiny' app, and available in the 'RStudio' viewer pane. Hover the mouse pointer over a cell to show details or drag a rectangle to zoom. A 'heatmap' is a popular graphical method for visualizing high-dimensional data, in which a table of numbers are encoded as a grid of colored cells. The rows and columns of the matrix are ordered to highlight patterns and are often accompanied by 'dendrograms'. 'Heatmaps' are used in many fields for visualizing observations, correlations, missing values patterns, and more. Interactive 'heatmaps' allow the inspection of specific value by hovering the mouse over a cell, as well as zooming into a region of the 'heatmap' by dragging a rectangle around the relevant area. This work is based on the 'ggplot2' and 'plotly.js' engine. It produces similar 'heatmaps' to 'heatmap.2' with the advantage of speed ('plotly.js' is able to handle larger size matrix), the ability to zoom from the 'dendrogram' panes, and the placing of factor variables in the sides of the 'heatmap'.
Authors:
heatmaply_1.5.0.tar.gz
heatmaply_1.5.0.zip(r-4.5)heatmaply_1.5.0.zip(r-4.4)heatmaply_1.5.0.zip(r-4.3)
heatmaply_1.5.0.tgz(r-4.4-any)heatmaply_1.5.0.tgz(r-4.3-any)
heatmaply_1.5.0.tar.gz(r-4.5-noble)heatmaply_1.5.0.tar.gz(r-4.4-noble)
heatmaply_1.5.0.tgz(r-4.4-emscripten)heatmaply_1.5.0.tgz(r-4.3-emscripten)
heatmaply.pdf |heatmaply.html✨
heatmaply/json (API)
NEWS
# Install 'heatmaply' in R: |
install.packages('heatmaply', repos = c('https://talgalili.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/talgalili/heatmaply/issues
d3-heatmapdendextenddendrogramggplot2heatmapplotly
Last updated 3 months agofrom:424dae0043. Checks:OK: 3 NOTE: 4. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Sep 14 2024 |
R-4.5-win | NOTE | Sep 14 2024 |
R-4.5-linux | NOTE | Sep 14 2024 |
R-4.4-win | NOTE | Sep 14 2024 |
R-4.4-mac | NOTE | Sep 14 2024 |
R-4.3-win | OK | Sep 14 2024 |
R-4.3-mac | OK | Sep 14 2024 |
Exports:BluesBrBGBuGnBuPucool_warmggheatmapGnBuGreensGreysheatmaplyheatmaply_corheatmaply_naheatmapris.heatmapris.na10is.plotlynormalizeOrangesOrRdpercentizePiYGPRGnPuBuPuBuGnPuOrPuRdPurplesRdBuRdGyRdPuRdYlBuRdYlGnRedsSpectralYlGnYlGnBuYlOrBrYlOrRd
Dependencies:askpassassertthatbase64encbslibcacachemcallrcliclustercodetoolscolorspacecpp11crosstalkcurldata.tabledendextenddigestdplyreggevaluatefansifarverfastmapfontawesomeforeachfsgclusgenericsggplot2gluegridExtragtablehighrhtmltoolshtmlwidgetshttrisobanditeratorsjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmeopensslpermutepillarpkgconfigplotlyplyrprocessxpromisespspurrrqapR6rappdirsRColorBrewerRcppregistryreshape2rlangrmarkdownsassscalesseriationstringistringrsystibbletidyrtidyselecttinytexTSPutf8vctrsveganviridisviridisLitewebshotwithrxfunyaml
Readme and manuals
Help Manual
Help page | Topics |
---|---|
ggplot heatmap equivalent to heatmaply | ggheatmap |
Side color plots for heatmaps | ggplot_side_color_plot |
Cluster heatmap based on plotly | heatmaply heatmaply.default heatmaply.heatmapr heatmaply_cor heatmaply_na |
Creates a heatmapr object | heatmapr |
Is the object of class heatmapr | is.heatmapr |
Indicates which elements are missing (either 1 and 0) | is.na10 |
Checks if an object is of class plotly or not. | is.plotly |
Normalization transformation (0-1) | normalize normalize.data.frame normalize.default normalize.matrix |
Empirical Percentile Transformation | percentize percentize.data.frame percentize.default percentize.matrix |
RColorBrewer color Ramp Palette | Blues BrBG BuGn BuPu cool_warm GnBu Greens Greys Oranges OrRd PiYG PRGn PuBu PuBuGn PuOr PuRd Purples RColorBrewer_colors RdBu RdGy RdPu RdYlBu RdYlGn Reds Spectral YlGn YlGnBu YlOrBr YlOrRd |