Package: gplots 3.3.0

gplots: Various R Programming Tools for Plotting Data

Various R programming tools for plotting data, including: - calculating and plotting locally smoothed summary function as ('bandplot', 'wapply'), - enhanced versions of standard plots ('barplot2', 'boxplot2', 'heatmap.2', 'smartlegend'), - manipulating colors ('col2hex', 'colorpanel', 'redgreen', 'greenred', 'bluered', 'redblue', 'rich.colors'), - calculating and plotting two-dimensional data summaries ('ci2d', 'hist2d'), - enhanced regression diagnostic plots ('lmplot2', 'residplot'), - formula-enabled interface to 'stats::lowess' function ('lowess'), - displaying textual data in plots ('textplot', 'sinkplot'), - plotting dots whose size reflects the relative magnitude of the elements ('balloonplot', 'bubbleplot'), - plotting "Venn" diagrams ('venn'), - displaying Open-Office style plots ('ooplot'), - plotting multiple data on same region, with separate axes ('overplot'), - plotting means and confidence intervals ('plotCI', 'plotmeans'), - spacing points in an x-y plot so they don't overlap ('space').

Authors:Gregory R. Warnes [aut], Ben Bolker [aut], Lodewijk Bonebakker [aut], Robert Gentleman [aut], Wolfgang Huber [aut], Andy Liaw [aut], Thomas Lumley [aut], Martin Maechler [aut], Arni Magnusson [aut], Steffen Moeller [aut], Marc Schwartz [aut], Bill Venables [aut], Tal Galili [aut, cre]

gplots_3.3.0.tar.gz
gplots_3.3.0.zip(r-4.7)gplots_3.3.0.zip(r-4.6)gplots_3.3.0.zip(r-4.5)
gplots_3.3.0.tgz(r-4.6-any)gplots_3.3.0.tgz(r-4.5-any)
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gplots_3.3.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
gplots/json (API)

# Install 'gplots' in R:
install.packages('gplots', repos = c('https://talgalili.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/talgalili/gplots/issues

Pkgdown/docs site:https://talgalili.github.io

Datasets:
  • catch.d - Catch at Age and Residuals
  • catch.r - Catch at Age and Residuals
  • rtPCR - Teratogenesis rtPCR data

On CRAN:

Conda:

15.19 score 14 stars 529 packages 17k scripts 103k downloads 2.1k mentions 34 exports 4 dependencies

Last updated from:26cfc27b08. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK154
source / vignettesOK212
linux-release-x86_64OK154
macos-release-arm64OK147
macos-oldrel-arm64OK147
windows-develOK87
windows-releaseOK98
windows-oldrelOK92
wasm-releaseOK150

Exports:adjust_hsvangleAxisballoonplotbandplotbarplot2blueredboxplot2bubbleplotci2dcol2hexcolorpanelgreenredheatmap.2hist2dlmplot2lowessooplotoverplotpanel.overplotplot.vennplotCIplotLowessplotmeansqqnorm.aovredblueredgreenreorder.factorresidplotrich.colorssinkplotspacetextplotvennwapply

Dependencies:bitopscaToolsgtoolsKernSmooth

Enhanced Heat Maps with heatmap.2
Introduction | Details on Dendrograms, Scaling, and Plot Layout | Dendrogram Behavior (Rowv, Colv) | Data Scaling (scale) | Color Selection | Plot Layout (Default and Customization) | Note | Load Data | Dendrogram Options | demonstrate the effect of row and column dendrogram options | Reorder dendrogram by branch means rather than sums | Color dendrograms' branches (using dendextend) | plot a sub-cluster using the same color coding as for the full heatmap | Show effect of row and column label rotation | Show effect of offsetRow/offsetCol (only works when srtRow/srtCol is | Show how to use 'extrafun' to replace the 'key' with a scatterplot | show how to customize the color key | Show effect of z-score scaling within columns, blue-red color scale | Correlation Heatmaps | For variable clustering, rather use distance based on cor(): | Interactive heatmap.2 using heatmaply | Session Information | References
Rendered fromheatmap.2.Rmdusingknitr::rmarkdown

Last update: 2025-11-29
Started: 2025-11-29

Venn Diagrams with gplots
Rendered fromvenn.Rmdusingknitr::rmarkdown

Last update: 2024-10-03
Started: 2024-09-28

Readme and manuals

Help Manual

Help pageTopics
Adjust Color in HSV Spaceadjust_hsv
Add a Axis to a Plot with Rotated LabelsangleAxis
Plot a graphical matrix where each cell contains a dot whose size reflects the relative magnitude of the corresponding component.balloonplot balloonplot.default balloonplot.table
Plot x-y Points with Locally Smoothed Mean and Standard Deviationbandplot bandplot.default bandplot.formula
Enhanced Bar Plotsbarplot2 barplot2.default
Produce a Boxplot Annotated with the Number of Observationsboxplot2
Bubble Plotbubbleplot bubbleplot.default bubbleplot.formula
Catch at Age and Residualscatch.d catch.r
Create 2-dimensional empirical confidence regionsci2d print.ci2d
Convert color names to hex RGB stringscol2hex
Generate a smoothly varying set of colorsbluered colorpanel greenred redblue redgreen
Defunct functionsboxplot.n plot.lm2 smartlegend
Enhanced Heat Mapheatmap.2
Compute and Plot a 2-Dimensional Histogramhist2d print.hist2d
Plots to assess the goodness of fit for the linear model objectslmplot2
Scatter Plot Smoothinglowess lowess.default lowess.formula plot.lowess plotLowess
Create an OpenOffice style plotooplot ooplot.default
Plot multiple variables on the same region, with appropriate axesoverplot panel.overplot
Plot Error Bars and Confidence IntervalsplotCI
Plot Group Means and Confidence Intervalsplotmeans
Makes a half or full normal plot for the effects from an aov modelqqnorm.aov
Reorder the Levels of a Factorreorder.factor
Undocumented functionsresidplot
Rich Color Palettesrich.colors
Teratogenesis rtPCR datartPCR
Send textual R output to a graphics devicesinkplot
Space points in an x-y plot so they don't overlap.space
Display text information in a graphics plot.textplot textplot.character textplot.data.frame textplot.default textplot.matrix
Plot a Venn diagramplot.venn venn
Compute the Value of a Function Over a Local Region Of An X-Y Plotwapply